Laboratory of Molecular Chronobiology

Biological clocks are found in most living organisms and their fundamental properties are highly conserved in vertebrates and invertebrates. Our laboratory is using various insect species to explore important questions of chronobiology and insect physiology. We combine research on established genetic models (Drosophila melanogaster) with studies on insects that have remarkably interesting biology, but only limited experimental tools are available (Pyrrhocoris apterus, Chymomyza costata, Periplaneta americana). We uniquely utilize the power of reverse genetics approaches (RNAi, genome editing, homologous recombination), “omic“-approaches (genomics, transcriptomics, peptidomics), in vitro techniques (tissue cultures, yeast two-hybrid assay), microsurgical interventions and behavioral experiments.

The biological processes of our interest include:

  • Molecular, anatomical and genetic basis of insect photoperiodic timers (also known as photoperiodic clocks)
  • Insect diapause and seasonality
  • Evolution of circadian genes and circadian clocks
  • Functional genomics and transcriptomics of Pyrrhocoris apterus
  • Neuroendocrinology of Pyrrhocoris apterus
  • Geographic variability in photoperiodic timers and circadian clocks

For details see “Current research projects“ (bottom of this webpage).



  • September 2016: Lenka's paper on "Geographic Variability of the Free Running Period in the Linden Bug" is accepted in Journal of Biological Rhythms (DOI: 10.1177/0748730416671213) - or send an e-mail request (david.dolezel(at) for pdf
  • April 2016: Jan Provaznik got a job at GeneCore, EMBL, Heidelberg
  • April 2016: Martin Pivarci is back from his three-month-stay at University of Sheffield (Roger Butlin's lab)
  • February 2016: Veronika’s paper is accepted in Insect Biochemistry and Molecular Biology
  • January 2016: Olina’s paper is accepted in PNAS

Current research projects

under construction: the linden bug:

Pyrrhocoris apterus as a new model species

The linden, Pyrrhocoris apterus, served as an excellent model of classical insect endocrinology for more than 50 years. However, neither functional genetics, nor genomic tools were available. Our goal is to introduce these techniques to P. apterus and establish this insect species as a model organism with full palette of experimental tools, especially:

  • Genomics: In collaboration with Vladimir Benes (GeneCore, EMBL, Heidelberg) we are sequencing P. apterus reference genome of our reference semi-inbreed line. In addition, we are resequencing genomes of additional 7 field-lines. On-going tissue-specific transcriptome sequencing is aiming at gene discovery and differential expression analysis.

  • Reverse genetics: Systemic RNA interference is routinely used for gene knock down in P. apterus (see Bajgar et al., 2013a; Smykal et al., 2014; Buresova et al., 2016). To create either complete null mutants, or specifically modify gene of interest, we established genome editing in P. apterus. Or first unique mutants are phenotypically characterized.

  • Neuropeptide inventory: P. apterus served as a model for insect endocrinology, yet, its neuropeptide repertoire is only very poorly known. Therefore we prospected the genome and transcriptome for genes and transcripts coding for neuropeptides and their receptors. The physical existence of processed peptides is further confirmed by MALDI-TOF-MS/MS in collaboration with Dr. Christian Wegener (Wurzburg University), and anatomical localization is assessed with ICC experiments.
  • Microsurgery: The size and anatomy of P. apterus allows for fine microsurgical operations, such as removing Corpus Allatum (P. apterus has only one gland), extirpation of pars intercerebralis region (Bajgar et al., 2013b), or eye removal.

Insect seasonality:

Photoperiodic timer and mechanisms regulating insect Diapause

Our major interest is diapause and its regulation, particularly seasonal switch depending on day-length measurement called photoperiodic timer (clock). Our goal is identifying architecture of photoperiodic timer at the genetic, molecular and anatomical levels. We mostly use two insect species: Pyrrhocoris apterus (Heteroptera) and Chymomyza costata (Diptera).

Pyrrhocoris apterus (Heteroptera) undergoes adult reproductive diapause, which is characterized by absence of Juvenile Hormone synthesis.

  • Using P. apterus, we described plasticity in Juvenile Hormone (JH) reception, where one universal receptor protein (MET) interacts with various partners in tissue specific manner (Smykal et al, 2014). One of responses requires interaction of MET with circadian proteins and output relies on novel, non-cyclical feedback between Par domain protein 1 and Cryptochrome (Bajgar et al., 2013a; Bajgar et al., 2013b).
  • Surprisingly, JH not required for male mating behavior or fertility, whereas circadian genes are needed for the photoperiod-dependent switch from diapause to reproductive growth of MAGs and for mating (Urbanova et al., 2016)

Drosophilid fly Chymomyza costata undergoes photoperiodically regulated larval diapause.

  • Using RNAseq technology, we characterized transcription profiles associated with photoperiodic diapause induction. Short day photoperiod triggering diapause was associated to remarkable inhibition of 20-hydroxy ecdysone (20-HE) signalling during the photoperiod-sensitive stage of C. costata larval development (Poupardin et al., 2015).
  • Using cell culture assays, we defined molecular mechanism of non-diapause (npd) mutant strain in C. costata. The 1855 bp deletion in npd strian removes crucial regulatory cis-elements as well as the minimal promoter, being subsequently responsible for the lack of tim mRNA expression (Kobelkova et al., 2010).

Representative publications:

Selected conference presentations:

  • Provaznik J.,Kotwica-Rolinska J., Bazalova O., Hejníková M., Blake J., Benes V., Pavlinic D., DolezelD. (2014) Differential expression analysis of diapause and reproductive females of firebug Pyrrhocoris apterus. Seventh International Symposium on Molecular Insect Science, 13-16 July, 2014, Amsterdam (poster)


P. apterus - map

Geographic adaptations of the linden bug, Pyrrhocoris apterus, and its phylogeography

We use our favorite model organism, Linden bug (Pyrrhocoris apterus), to study diapause and particularly its photoperiodic regulation. Seasonal environmental changes are mostly influenced by latitude and altitude of particular locality. Indeed, we observe remarkable variability in photoperiodic and circadian clocks between geographical field-lines of P. apterus. Robust analysis of P. apterus phylogeography is needed to shed some light on origin of these adaptations. In collaboration with Prof. Roger Butlin (University of Sheffield) we are performing RAD sequencing and analysis of samples from approximately 150 localities.

Current collection of P. apterus (see the map) was only possible thanks to generous help of following colleagues: Adam Bajgar, Alejandro Cabezas-Cruz, Aleksandra Konjevic, Barbara Lis, Jerzy A. Lis, Carl-Cedric Coulianos, Rodolfe Costa, Dora Nagy, Eva Hola, Hanka Vaneckova, Iva Fukova, Jana Pavlová, Joanna Kotwica-Rolinska, Jula Lukes, Kai Schuette, Kajka Straznicka, Lucia Salis, Lukas Cizek, Lukas Drag, Manuel Baena, Marek Jindra, Marketa Ondrackova, Martin Kaltenpoth, Martin Vacha, Matilde Eizaguirre, Milan Stech, Milena Damulewicz, Olina Bazalova, Petr Kment, Petra Sekyrova, Plamen Kalushkov, Radka Zavodska, Ramon Albajes, Stanislav Rada, Teemu Rintala, Vlastimil Smykal, Xanti Pagola, Zejlko Popovic,

However, several geographical regions are either underrepresented or even absent completely (see red circles in the map below). Therefore, we would really welcome samples (either dead or alive) from following regions:

Europe – England, Sweden, Norway, Denmark, Mediterranean islands (Sicily, Corsica, Sardinia, islands in Aegean sea), Romania, Moldavia, Portugal, Belarus, Ukraine, Russia,

North Africa– Morocco, Tunisia, Algeria, Egypt

East – Turkey, Syria, Lebanon, Jordan, Iraq, Iran, Afghanistan, Pakistan, Oman, Saudi Arabia, Emirates, Georgia, Azerbaijan, Turkmenistan, Tajikistan, Uzbekistan, Kyrgyzstan, Kazakhstan, Russia, South West Mongolia, North West China

Sample collection: The optimal way for storing and transporting samples seems to be 96% ethanol (non-denatured). 2ml screw cup tubes can accommodate 5 - 8 bugs from the same locality. We are ready to send prepared tubes filled with EtOH, just send an e-mail request, please. Although we are happy even for one individual bug, 10-15 specimens from one locality are optimal. It is important to have the report of the locality (such as GPS position or locality name from the map, elevation is also very useful). Please, if possible, it would be also great to mention, if the locality was urbanized area (town, park and similar area modified by human) or if the locality is more similar to original nature-like type (forest, steppe, mountains). In ideal case we would like to have samples collected approximately 200 km apart in lowlands, while in mountains or complex terrain even higher density is helpful (down to tens of kilometers).

Living bugs – an alternative is to collect live specimens. Adults survive with wet piece of cotton or cellulose in small paper box for more than one week, as long as it is not too hot. We are really happy to obtain living specimens for establishing colonies, where circadian and photoperiodic phenotypes can be characterized.

Species identification - Pyrrhocoris apteruscan be quite easily identified thanks to its aposematic coloration. Both, larvae or adults can be collected and are welcome. We are also seeking for samples of closely related pyrrhocorids, such as P. sibiricus, P. marginalis, and genus Scantius (see the pictures below).

Contact:  David Dolezel or Martin Pivarci;;; Institute of Entomology; Biology center CAS; Branisovska 31; 370 05 Ceske Budejovice; Czech Republic

Localities, from which we would like to obtain P. apterusthe Linden bug, Pyrrhocoris apterusPyrrhocoris apterus relatives


Publication in press:

  • Pivarciova, Provaznik, Vaneckova, Pivarci, Peckova, Bazalova, Wu, Cada, Kment, Kotwica-Rolinska, Dolezel: Unexpected geographic variability of free running period in the linden bug, Pyrrhocoris apterus (Journal of Biological Rhythms, DOI: 10.1177/0748730416671213)

Circadian clocks

Circadian clock - evolution, comparative studies

Circadian biological clocks are found in most living organisms and their fundamental properties are highly conserved in vertebrates and invertebrates. The fruitfly, Drosophila melanogaster served as a premier insect species for the molecular analysis of the circadian rhythms. Because of the functional similarities of the circadian clocks among all metazoans, it was suggested that the molecular mechanisms underlying the clock function would be conserved as well. Surprisingly, we can see remarkable differences between the molecular regulations of the circadian timing system even among holometabolous insects. The long-term goal of our laboratory is to gain a better understanding of the cellular and molecular mechanisms that underlie circadian rhythmicity and to shed some light on evolution of circadian and photoperiodic clocks. We also explore role of circadian genes in a non-clock processes, i.e., in magnetoreception.

Representative publications:

Selected conference presentations:

  • Obornik, M.; Krucinska, J.; Jonakova, M.; Dolezel, D. (2013) Formation and excystation of zoosporangia in Chromera velia, 14th International Congress of Protistology, July 28 -August 02, 2013


Biology Centre CAS
Institute of Entomology
Branišovská 1160/31
370 05 České Budějovice

Staff search